PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00039100-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 255aa    MW: 28463 Da    PI: 6.7602
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00039100-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-161463148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                      rg+WT+ Ed +l ++++ +G g+W+ I+++ g   gRt++++k++w+++l
  PSME_00039100-RA 14 RGAWTAKEDMILSQYIQIHGDGSWRNIPKKAGrlPGRTDNEIKNYWNTHL 63
                      89*********************************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.5E-21569IPR009057Homeodomain-like
PROSITE profilePS5129418.768967IPR017930Myb domain
SuperFamilySSF466894.38E-15969IPR009057Homeodomain-like
SMARTSM007172.3E-131365IPR001005SANT/Myb domain
PfamPF002492.1E-141463IPR001005SANT/Myb domain
CDDcd001673.46E-131663No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGRSPCCSEE GLNRGAWTAK EDMILSQYIQ IHGDGSWRNI PKKAGRLPGR TDNEIKNYWN  60
THLTKKMLSM AQSQHNSTKN LKTRSKTTPV KVPVFKTTPV RIKTVVRQPE MEILSGSNGY  120
GCSYLSSHKV FNSCNVKETT NSSKACCDVL VNHAIIADDS DRIPFSPADN NMVGMEARNC  180
NIPMLSLGEE RTPDYNYFAG LPESLLNLNN LYSPDCNLLS SLLDAESEEF CNSFTNADSQ  240
AMEKFFDNTT HTLDS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LMJ64e-68B8LMJ6_PICSI; Putative uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.18e-23myb domain protein 111